IL_6T59_098

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6T59|1|54|U|2880

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_098 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1168

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6T59|1|54|C|2867
6T59|1|54|G|2868
6T59|1|54|U|2869
6T59|1|54|A|2870
6T59|1|54|A|2871
6T59|1|54|C|2872
*
6T59|1|54|G|2877
6T59|1|54|G|2878
6T59|1|54|A|2879
6T59|1|54|U|2880
6T59|1|54|A|2881
6T59|1|54|A|2882
6T59|1|54|G|2883

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain n3

60s ribosomal protein l41

Chain p3

eL43