IL_6T59_102

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6T59|1|54|A|3663, 6T59|1|54|U|3679, 6T59|1|54|C|3683

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_102 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0802

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6T59|1|54|C|3660
6T59|1|54|G|3661
6T59|1|54|A|3662
6T59|1|54|A|3663
6T59|1|54|G|3664
6T59|1|54|G|3665
*
6T59|1|54|U|3677
6T59|1|54|G|3678
6T59|1|54|U|3679
6T59|1|54|U|3680
6T59|1|54|G|3681
6T59|1|54|A|3682
6T59|1|54|C|3683
6T59|1|54|G|3684

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain p3

eL43