IL_6T59_107

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_107 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1701

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6T59|1|54|U|3715
6T59|1|54|C|3716
6T59|1|54|A|3717
6T59|1|54|A|3718
6T59|1|54|A|3719
6T59|1|54|G|3720
6T59|1|54|U|3721
*
6T59|1|54|A|3732
6T59|1|54|A|3733
6T59|1|54|U|3734
6T59|1|54|G|3735
6T59|1|54|A|3736
6T59|1|54|A|3737
6T59|1|54|G|3738

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain i3

60S ribosomal protein L36