IL_6T59_109

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6T59|1|54|A|3785, 6T59|1|54|C|3791, 6T59|1|54|C|3810

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_109 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1004

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6T59|1|54|C|3781
6T59|1|54|C|3782
6T59|1|54|A|3783
6T59|1|54|A|3784
6T59|1|54|A|3785
6T59|1|54|U|3786
6T59|1|54|G|3787
6T59|1|54|C|3788
6T59|1|54|C|3789
6T59|1|54|U|3790
6T59|1|54|C|3791
6T59|1|54|G|3792
*
6T59|1|54|C|3808
6T59|1|54|G|3809
6T59|1|54|C|3810
6T59|1|54|G|3811

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain n3

60s ribosomal protein l41