IL_6T59_124

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6T59|1|54|U|4437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_124 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.1057

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6T59|1|54|G|4405
6T59|1|54|U|4406
6T59|1|54|G|4407
*
6T59|1|54|U|4435
6T59|1|54|U|4436
6T59|1|54|U|4437
6T59|1|54|U|4438
6T59|1|54|U|4439

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain I3

60S ribosomal protein L10