IL_6T59_137

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6T59|1|54|U|4634, 6T59|1|54|U|4636

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_137 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2485

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6T59|1|54|U|4632
6T59|1|54|G|4633
6T59|1|54|U|4634
6T59|1|54|A|4635
6T59|1|54|U|4636
6T59|1|54|G|4637
*
6T59|1|54|C|4662
6T59|1|54|G|4663
6T59|1|54|A|4664
6T59|1|54|A|4665
6T59|1|54|G|4666

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain W3

eL24

Chain d3

eL31