IL_6T59_140

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6T59|1|54|A|4708

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_140 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2284

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6T59|1|54|G|4680
6T59|1|54|A|4681
6T59|1|54|U|4682
6T59|1|54|U|4683
6T59|1|54|A|4684
6T59|1|54|U|4685
*
6T59|1|54|A|4705
6T59|1|54|G|4706
6T59|1|54|A|4707
6T59|1|54|A|4708
6T59|1|54|U|4709
6T59|1|54|C|4710

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13

Chain m3

eL40