IL_6T7I_063
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAU*GUUUUC
- Length
- 10 nucleotides
- Bulged bases
- 6T7I|1|C1|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T7I_063 not in the Motif Atlas
- Homologous match to IL_5TBW_065
- Geometric discrepancy: 0.2869
- The information below is about IL_5TBW_065
- Detailed Annotation
- Multiple bulged bases with near cWW
- Broad Annotation
- Multiple bulged bases with near cWW
- Motif group
- IL_58686.2
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T7I|1|C1|G|1623
6T7I|1|C1|G|1624
6T7I|1|C1|A|1625
6T7I|1|C1|U|1626
*
6T7I|1|C1|G|1817
6T7I|1|C1|U|1818
6T7I|1|C1|U|1819
6T7I|1|C1|U|1820
6T7I|1|C1|U|1821
6T7I|1|C1|C|1822
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LZ
- 60S ribosomal protein L27-A
- Chain Lg
- 60S ribosomal protein L34-A
Coloring options: