IL_6T7I_166

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6T7I|1|C2|A|579, 6T7I|1|C2|U|581, 6T7I|1|C2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_166 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.164

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6T7I|1|C2|G|562
6T7I|1|C2|U|563
6T7I|1|C2|G|564
6T7I|1|C2|C|565
6T7I|1|C2|C|566
6T7I|1|C2|A|567
6T7I|1|C2|G|568
*
6T7I|1|C2|C|575
6T7I|1|C2|G|576
6T7I|1|C2|G|577
6T7I|1|C2|U|578
6T7I|1|C2|A|579
6T7I|1|C2|A|580
6T7I|1|C2|U|581
6T7I|1|C2|U|582
6T7I|1|C2|C|583

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A