IL_6T7I_190
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6T7I|1|C2|C|1158, 6T7I|1|C2|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T7I_190 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1626
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6T7I|1|C2|A|1157
6T7I|1|C2|C|1158
6T7I|1|C2|C|1159
6T7I|1|C2|A|1160
*
6T7I|1|C2|U|1617
6T7I|1|C2|C|1618
6T7I|1|C2|C|1619
6T7I|1|C2|C|1620
6T7I|1|C2|U|1621
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain 7
- Transfer RNA; tRNA
- Chain SF
- Rps5p
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sa
- 40S ribosomal protein S26-A
- Chain Sc
- 40S ribosomal protein S28-B
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