IL_6T7T_056

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6T7T|1|C1|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_056 not in the Motif Atlas

Geometric match to IL_5TBW_057

Geometric discrepancy: 0.1046

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

6T7T|1|C1|C|1376
6T7T|1|C1|G|1377
6T7T|1|C1|U|1378
*
6T7T|1|C1|A|1428
6T7T|1|C1|G|1429
6T7T|1|C1|U|1430
6T7T|1|C1|G|1431

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L28

Chain Le

60S ribosomal protein L32