IL_6T7T_060

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_060 not in the Motif Atlas

Geometric match to IL_5TBW_061

Geometric discrepancy: 0.0812

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6T7T|1|C1|G|1444
6T7T|1|C1|U|1445
6T7T|1|C1|A|1446
6T7T|1|C1|G|1447
6T7T|1|C1|U|1448
6T7T|1|C1|A|1449
6T7T|1|C1|G|1450
*
6T7T|1|C1|C|2354
6T7T|1|C1|G|2355
6T7T|1|C1|A|2356
6T7T|1|C1|A|2357
6T7T|1|C1|A|2358
6T7T|1|C1|C|2359

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LP

60S ribosomal protein L17-A