IL_6T7T_099

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_099 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.1006

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6T7T|1|C1|U|2718
6T7T|1|C1|U|2719
6T7T|1|C1|G|2720
6T7T|1|C1|A|2721
*
6T7T|1|C1|U|2735
6T7T|1|C1|A|2736
6T7T|1|C1|C|2737
6T7T|1|C1|A|2738

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LQ

60S ribosomal protein L18-A

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L42-A