IL_6T7T_116

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

6T7T|1|C1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_116 not in the Motif Atlas

Geometric match to IL_5TBW_117

Geometric discrepancy: 0.1336

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6T7T|1|C1|U|3047
6T7T|1|C1|A|3048
6T7T|1|C1|A|3049
6T7T|1|C1|U|3050
6T7T|1|C1|U|3051
*
6T7T|1|C1|A|3091
6T7T|1|C1|C|3092
6T7T|1|C1|C|3093
6T7T|1|C1|A|3094

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A

Chain LW

60S ribosomal protein L24-A