IL_6T7T_169

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6T7T|1|C2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_169 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.1514

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6T7T|1|C2|G|616
6T7T|1|C2|U|617
6T7T|1|C2|U|618
6T7T|1|C2|A|619
6T7T|1|C2|A|620
6T7T|1|C2|A|621
6T7T|1|C2|A|622
*
6T7T|1|C2|U|1104
6T7T|1|C2|C|1105

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A

Chain Sa

40S ribosomal protein S26-B