IL_6T7T_181

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6T7T|1|C2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_181 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1059

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6T7T|1|C2|C|874
6T7T|1|C2|G|875
6T7T|1|C2|G|876
6T7T|1|C2|G|877
6T7T|1|C2|G|878
*
6T7T|1|C2|C|950
6T7T|1|C2|A|951
6T7T|1|C2|A|952
6T7T|1|C2|G|953

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26-B