3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUUAGUAA*UGAAGCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_006 not in the Motif Atlas
Homologous match to IL_5TBW_006
Geometric discrepancy: 0.1281
The information below is about IL_5TBW_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88613.1
Basepair signature
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
2

Unit IDs

6T83|1|1b|C|82
6T83|1|1b|U|83
6T83|1|1b|U|84
6T83|1|1b|A|85
6T83|1|1b|G|86
6T83|1|1b|U|87
6T83|1|1b|A|88
6T83|1|1b|A|89
*
6T83|1|1b|U|97
6T83|1|1b|G|98
6T83|1|1b|A|99
6T83|1|1b|A|100
6T83|1|1b|G|101
6T83|1|1b|C|102
6T83|1|1b|G|103

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Ly
60S ribosomal protein L13-A
Chain Ny
60S ribosomal protein L15-A
Chain Qy
60S ribosomal protein L18-A
Chain ay
60S ribosomal protein L28
Chain ob
60S ribosomal protein L42-A

Coloring options:


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