IL_6T83_020

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6T83|1|1b|U|534, 6T83|1|1b|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1526

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T83|1|1b|G|531
6T83|1|1b|A|532
6T83|1|1b|A|533
6T83|1|1b|U|534
6T83|1|1b|G|535
6T83|1|1b|U|536
6T83|1|1b|A|537
6T83|1|1b|G|538
*
6T83|1|1b|U|553
6T83|1|1b|A|554
6T83|1|1b|U|555
6T83|1|1b|U|556
6T83|1|1b|A|557
6T83|1|1b|U|558
6T83|1|1b|A|559
6T83|1|1b|G|560
6T83|1|1b|C|561

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain My

60S ribosomal protein L14-A

Chain Sy

60S ribosomal protein L20-A