3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_114 not in the Motif Atlas
Geometric match to IL_5TBW_116
Geometric discrepancy: 0.1474
The information below is about IL_5TBW_116
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6T83|1|1b|C|3018
6T83|1|1b|U|3019
6T83|1|1b|U|3020
6T83|1|1b|A|3021
6T83|1|1b|G|3022
6T83|1|1b|U|3023
6T83|1|1b|A|3024
6T83|1|1b|C|3025
*
6T83|1|1b|G|3030
6T83|1|1b|G|3031
6T83|1|1b|A|3032
6T83|1|1b|A|3033
6T83|1|1b|C|3034
6T83|1|1b|A|3035
6T83|1|1b|G|3036

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain By
60S ribosomal protein L3
Chain Hy
60S ribosomal protein L9-A
Chain Vy
60S ribosomal protein L23-A
Chain mb
Ubiquitin-60S ribosomal protein L40

Coloring options:


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