IL_6T83_167

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6T83|1|2b|A|579, 6T83|1|2b|U|581, 6T83|1|2b|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_167 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1529

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6T83|1|2b|G|562
6T83|1|2b|U|563
6T83|1|2b|G|564
6T83|1|2b|C|565
6T83|1|2b|C|566
6T83|1|2b|A|567
6T83|1|2b|G|568
*
6T83|1|2b|C|575
6T83|1|2b|G|576
6T83|1|2b|G|577
6T83|1|2b|U|578
6T83|1|2b|A|579
6T83|1|2b|A|580
6T83|1|2b|U|581
6T83|1|2b|U|582
6T83|1|2b|C|583

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Db

40S ribosomal protein S3

Chain Xb

40S ribosomal protein S23-A

Chain eb

40S ribosomal protein S30-A