IL_6T83_180

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6T83|1|2b|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_180 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1751

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6T83|1|2b|C|874
6T83|1|2b|G|875
6T83|1|2b|G|876
6T83|1|2b|G|877
6T83|1|2b|G|878
*
6T83|1|2b|C|950
6T83|1|2b|A|951
6T83|1|2b|A|952
6T83|1|2b|G|953

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Ba

40S ribosomal protein S1-A

Chain Nb

40S ribosomal protein S13

Chain ab

40S ribosomal protein S26-A