IL_6T83_290

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6T83|1|Aa|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_290 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2878

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6T83|1|Aa|U|1218
6T83|1|Aa|C|1219
6T83|1|Aa|U|1220
6T83|1|Aa|A|1221
6T83|1|Aa|G|1222
6T83|1|Aa|A|1223
6T83|1|Aa|C|1224
6T83|1|Aa|A|1225
6T83|1|Aa|G|1226
*
6T83|1|Aa|C|1283
6T83|1|Aa|C|1284
6T83|1|Aa|G|1285
6T83|1|Aa|A|1286
6T83|1|Aa|A|1287

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L20-A

Chain ba

60S acidic ribosomal protein P0