IL_6T83_311

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_311 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.1806

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6T83|1|Aa|A|1883
6T83|1|Aa|A|1884
6T83|1|Aa|U|1885
6T83|1|Aa|A|1886
6T83|1|Aa|A|1887
6T83|1|Aa|U|1888
6T83|1|Aa|G|1889
*
6T83|1|Aa|C|2346
6T83|1|Aa|U|2347
6T83|1|Aa|A|2348
6T83|1|Aa|U|2349

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L17-A

Chain Ea

60S ribosomal protein L3

Chain O

60S ribosomal protein L31-A