IL_6T83_351

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

6T83|1|Aa|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_351 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.232

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6T83|1|Aa|U|3047
6T83|1|Aa|A|3048
6T83|1|Aa|A|3049
6T83|1|Aa|U|3050
6T83|1|Aa|U|3051
*
6T83|1|Aa|A|3091
6T83|1|Aa|C|3092
6T83|1|Aa|C|3093
6T83|1|Aa|A|3094

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ea

60S ribosomal protein L3

Chain G

60S ribosomal protein L23-A

Chain H

60S ribosomal protein L24-A