IL_6T83_354

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6T83|1|Aa|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_354 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.1693

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6T83|1|Aa|A|3103
6T83|1|Aa|U|3104
6T83|1|Aa|U|3105
6T83|1|Aa|A|3106
6T83|1|Aa|U|3107
*
6T83|1|Aa|A|3127
6T83|1|Aa|G|3128
6T83|1|Aa|A|3129
6T83|1|Aa|A|3130
6T83|1|Aa|U|3131

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ka

60S ribosomal protein L9-A

Chain Qa

60S ribosomal protein L16-A

Chain X

Ubiquitin-60S ribosomal protein L40