IL_6T83_392

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_392 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2093

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6T83|1|a|U|150
6T83|1|a|G|151
6T83|1|a|U|152
*
6T83|1|a|A|162
6T83|1|a|G|163
6T83|1|a|A|164

Current chains

Chain a

18S rRNA

Nearby chains

Chain H

60S ribosomal protein L24-A

Chain h

40S ribosomal protein S6-A

Chain z

40S ribosomal protein S24-A