IL_6T83_413

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_413 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2366

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6T83|1|a|G|616
6T83|1|a|U|617
6T83|1|a|U|618
6T83|1|a|A|619
6T83|1|a|A|620
6T83|1|a|A|621
6T83|1|a|A|622
*
6T83|1|a|U|1104
6T83|1|a|C|1105

Current chains

Chain a

18S rRNA

Nearby chains

Chain 1

40S ribosomal protein S26-A

Chain y

40S ribosomal protein S23-A