IL_6TB3_019

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6TB3|1|2|U|313, 6TB3|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0803

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6TB3|1|2|U|311
6TB3|1|2|A|312
6TB3|1|2|U|313
6TB3|1|2|C|314
6TB3|1|2|A|315
6TB3|1|2|A|316
*
6TB3|1|2|U|348
6TB3|1|2|U|349
6TB3|1|2|U|350
6TB3|1|2|C|351
6TB3|1|2|A|352
6TB3|1|2|A|353
6TB3|1|2|C|354
6TB3|1|2|G|355

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain V

40S ribosomal protein S8

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A