IL_6TB3_033

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6TB3|1|2|A|579, 6TB3|1|2|U|581, 6TB3|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_033 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1175

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6TB3|1|2|G|562
6TB3|1|2|U|563
6TB3|1|2|G|564
6TB3|1|2|C|565
6TB3|1|2|C|566
6TB3|1|2|A|567
6TB3|1|2|G|568
*
6TB3|1|2|C|575
6TB3|1|2|G|576
6TB3|1|2|G|577
6TB3|1|2|U|578
6TB3|1|2|A|579
6TB3|1|2|A|580
6TB3|1|2|U|581
6TB3|1|2|U|582
6TB3|1|2|C|583

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain A

40S ribosomal protein S3

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A