IL_6TB3_034

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6TB3|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_034 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0951

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6TB3|1|2|G|616
6TB3|1|2|U|617
6TB3|1|2|U|618
6TB3|1|2|A|619
6TB3|1|2|A|620
6TB3|1|2|A|621
6TB3|1|2|A|622
*
6TB3|1|2|U|1104
6TB3|1|2|C|1105

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-B