IL_6TB3_111

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6TB3|1|BQ|U|534, 6TB3|1|BQ|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_111 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1133

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6TB3|1|BQ|G|531
6TB3|1|BQ|A|532
6TB3|1|BQ|A|533
6TB3|1|BQ|U|534
6TB3|1|BQ|G|535
6TB3|1|BQ|U|536
6TB3|1|BQ|A|537
6TB3|1|BQ|G|538
*
6TB3|1|BQ|U|553
6TB3|1|BQ|A|554
6TB3|1|BQ|U|555
6TB3|1|BQ|U|556
6TB3|1|BQ|A|557
6TB3|1|BQ|U|558
6TB3|1|BQ|A|559
6TB3|1|BQ|G|560
6TB3|1|BQ|C|561

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain BH

60S ribosomal protein L20-A