IL_6TB3_134

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

6TB3|1|BQ|C|1016, 6TB3|1|BQ|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_134 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.2365

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6TB3|1|BQ|G|1013
6TB3|1|BQ|U|1014
6TB3|1|BQ|U|1015
6TB3|1|BQ|C|1016
6TB3|1|BQ|C|1017
6TB3|1|BQ|G|1018
*
6TB3|1|BQ|U|1034
6TB3|1|BQ|G|1035
6TB3|1|BQ|A|1036
6TB3|1|BQ|C|1037

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain BD

60S ribosomal protein L10