IL_6TB3_144

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6TB3|1|BQ|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_144 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1738

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6TB3|1|BQ|U|1218
6TB3|1|BQ|C|1219
6TB3|1|BQ|U|1220
6TB3|1|BQ|A|1221
6TB3|1|BQ|G|1222
6TB3|1|BQ|A|1223
6TB3|1|BQ|C|1224
6TB3|1|BQ|A|1225
6TB3|1|BQ|G|1226
*
6TB3|1|BQ|C|1283
6TB3|1|BQ|C|1284
6TB3|1|BQ|G|1285
6TB3|1|BQ|A|1286
6TB3|1|BQ|A|1287

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BH

60S ribosomal protein L20-A