IL_6TB3_158
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_158 not in the Motif Atlas
- Homologous match to IL_8C3A_073
- Geometric discrepancy: 0.0956
- The information below is about IL_8C3A_073
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
6TB3|1|BQ|U|1645
6TB3|1|BQ|G|1646
6TB3|1|BQ|A|1647
6TB3|1|BQ|A|1648
6TB3|1|BQ|U|1649
*
6TB3|1|BQ|A|1806
6TB3|1|BQ|G|1807
6TB3|1|BQ|G|1808
6TB3|1|BQ|A|1809
6TB3|1|BQ|A|1810
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AN
- 60S ribosomal protein L27-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain BN
- 60S ribosomal protein L34-A
- Chain BV
- 60S ribosomal protein L41-A
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