IL_6TB3_206

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6TB3|1|BQ|A|3142, 6TB3|1|BQ|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_206 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0765

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6TB3|1|BQ|C|3004
6TB3|1|BQ|A|3005
6TB3|1|BQ|A|3006
6TB3|1|BQ|U|3007
*
6TB3|1|BQ|A|3139
6TB3|1|BQ|G|3140
6TB3|1|BQ|A|3141
6TB3|1|BQ|A|3142
6TB3|1|BQ|C|3143
6TB3|1|BQ|G|3144

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3