IL_6TB3_247

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_247 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.4081

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6TB3|1|BQ|G|1623
6TB3|1|BQ|G|1624
6TB3|1|BQ|A|1625
*
6TB3|1|BQ|U|1818
6TB3|1|BQ|U|1819
6TB3|1|BQ|U|1820
6TB3|1|BQ|U|1821
6TB3|1|BQ|C|1822

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A

Chain BV

60S ribosomal protein L41-A