IL_6TBV_036
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 6TBV|1|16S1|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TBV_036 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0844
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6TBV|1|16S1|U|605
6TBV|1|16S1|G|606
6TBV|1|16S1|A|607
6TBV|1|16S1|A|608
6TBV|1|16S1|A|609
6TBV|1|16S1|U|610
6TBV|1|16S1|C|611
6TBV|1|16S1|C|612
*
6TBV|1|16S1|G|628
6TBV|1|16S1|A|629
6TBV|1|16S1|A|630
6TBV|1|16S1|C|631
6TBV|1|16S1|U|632
6TBV|1|16S1|G|633
Current chains
- Chain 16S1
- 16S rRNA
Nearby chains
- Chain S041
- 30S ribosomal protein S4
- Chain S081
- 30S ribosomal protein S8
- Chain S161
- 30S ribosomal protein S16
- Chain S171
- 30S ribosomal protein S17
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