IL_6TBV_156

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_156 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.4775

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6TBV|1|23S1|G|2110
6TBV|1|23S1|U|2111
6TBV|1|23S1|G|2112
6TBV|1|23S1|U|2113
6TBV|1|23S1|A|2114
6TBV|1|23S1|G|2115
6TBV|1|23S1|G|2116
6TBV|1|23S1|A|2117
6TBV|1|23S1|U|2118
6TBV|1|23S1|A|2119
6TBV|1|23S1|G|2120
6TBV|1|23S1|G|2121
*
6TBV|1|23S1|C|2177
6TBV|1|23S1|C|2178
6TBV|1|23S1|C|2179

Current chains

Chain 23S1

23S rRNA

Nearby chains