IL_6TBV_173

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6TBV|1|23S1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_173 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.075

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6TBV|1|23S1|C|2636
6TBV|1|23S1|U|2637
6TBV|1|23S1|G|2638
6TBV|1|23S1|A|2639
6TBV|1|23S1|G|2640
*
6TBV|1|23S1|C|2774
6TBV|1|23S1|G|2775
6TBV|1|23S1|A|2776
6TBV|1|23S1|G|2777
6TBV|1|23S1|A|2778
6TBV|1|23S1|U|2779
6TBV|1|23S1|G|2780
6TBV|1|23S1|A|2781
6TBV|1|23S1|G|2782

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L131

50S ribosomal protein L13