IL_6TC3_005
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TC3_005 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0547
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6TC3|1|05S1|C|71
6TC3|1|05S1|G|72
6TC3|1|05S1|A|73
6TC3|1|05S1|U|74
6TC3|1|05S1|G|75
6TC3|1|05S1|G|76
6TC3|1|05S1|U|77
6TC3|1|05S1|A|78
6TC3|1|05S1|G|79
*
6TC3|1|05S1|C|97
6TC3|1|05S1|G|98
6TC3|1|05S1|A|99
6TC3|1|05S1|G|100
6TC3|1|05S1|A|101
6TC3|1|05S1|G|102
6TC3|1|05S1|U|103
6TC3|1|05S1|A|104
6TC3|1|05S1|G|105
Current chains
- Chain 05S1
- 5S rRNA
Nearby chains
- Chain 23S1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L161
- 50S ribosomal protein L16
- Chain L251
- 50S ribosomal protein L25
- Chain L301
- 50S ribosomal protein L30
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