IL_6TC3_017

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6TC3|1|16S1|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_017 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1122

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6TC3|1|16S1|G|147
6TC3|1|16S1|G|148
6TC3|1|16S1|A|149
6TC3|1|16S1|U|150
6TC3|1|16S1|A|151
6TC3|1|16S1|A|152
6TC3|1|16S1|C|153
*
6TC3|1|16S1|G|168
6TC3|1|16S1|C|169
6TC3|1|16S1|U|170
6TC3|1|16S1|A|171
6TC3|1|16S1|A|172
6TC3|1|16S1|U|173
6TC3|1|16S1|A|174
6TC3|1|16S1|C|175

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S201

30S ribosomal protein S20