IL_6TC3_042

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_042 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0475

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6TC3|1|16S1|G|774
6TC3|1|16S1|G|775
6TC3|1|16S1|G|776
6TC3|1|16S1|A|777
6TC3|1|16S1|G|778
*
6TC3|1|16S1|U|804
6TC3|1|16S1|C|805

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain L021

50S ribosomal protein L2

Chain S111

30S ribosomal protein S11