IL_6TC3_044

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_044 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0719

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6TC3|1|16S1|G|887
6TC3|1|16S1|G|888
6TC3|1|16S1|A|889
6TC3|1|16S1|G|890
6TC3|1|16S1|U|891
6TC3|1|16S1|A|892
6TC3|1|16S1|C|893
6TC3|1|16S1|G|894
*
6TC3|1|16S1|U|905
6TC3|1|16S1|A|906
6TC3|1|16S1|A|907
6TC3|1|16S1|A|908
6TC3|1|16S1|A|909
6TC3|1|16S1|C|910

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S121

30S ribosomal protein S12