IL_6TC3_048

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_048 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.0975

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

6TC3|1|16S1|G|953
6TC3|1|16S1|G|954
*
6TC3|1|16S1|C|1226
6TC3|1|16S1|A|1227
6TC3|1|16S1|C|1228

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain PTR1

Transfer RNA; tRNA

Chain S131

30S ribosomal protein S13

Chain S191

30S ribosomal protein S19