IL_6TC3_052

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_052 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.148

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6TC3|1|16S1|G|1050
6TC3|1|16S1|C|1051
6TC3|1|16S1|U|1052
*
6TC3|1|16S1|G|1206
6TC3|1|16S1|2MG|1207
6TC3|1|16S1|C|1208

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S031

30S ribosomal protein S3

Chain S141

30S ribosomal protein S14