IL_6TC3_065

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_065 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0922

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6TC3|1|16S1|G|1401
6TC3|1|16S1|4OC|1402
6TC3|1|16S1|C|1403
6TC3|1|16S1|C|1404
*
6TC3|1|16S1|G|1497
6TC3|1|16S1|UR3|1498
6TC3|1|16S1|A|1499
6TC3|1|16S1|A|1500
6TC3|1|16S1|C|1501

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain MRN1

mRNA

Chain PTR1

Transfer RNA; tRNA