IL_6TC3_078

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_078 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6TC3|1|23S1|C|239
6TC3|1|23S1|C|240
6TC3|1|23S1|A|241
6TC3|1|23S1|G|242
6TC3|1|23S1|U|243
6TC3|1|23S1|A|244
6TC3|1|23S1|G|245
*
6TC3|1|23S1|C|253
6TC3|1|23S1|G|254
6TC3|1|23S1|A|255
6TC3|1|23S1|A|256
6TC3|1|23S1|C|257
6TC3|1|23S1|G|258

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35