IL_6TC3_090

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_090 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0618

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6TC3|1|23S1|U|703
6TC3|1|23S1|G|704
6TC3|1|23S1|A|705
6TC3|1|23S1|A|706
6TC3|1|23S1|G|707
*
6TC3|1|23S1|U|724
6TC3|1|23S1|G|725
6TC3|1|23S1|G|726
6TC3|1|23S1|A|727
6TC3|1|23S1|G|728

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2