IL_6TC3_095

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_095 not in the Motif Atlas

Homologous match to IL_5J7L_269

Geometric discrepancy: 0.083

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6TC3|1|23S1|U|850
6TC3|1|23S1|C|851
*
6TC3|1|23S1|G|926
6TC3|1|23S1|A|927
6TC3|1|23S1|A|928

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 05S1

5S ribosomal RNA; 5S rRNA

Chain L301

50S ribosomal protein L30