IL_6TC3_104

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_104 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6TC3|1|23S1|U|1004
6TC3|1|23S1|C|1005
6TC3|1|23S1|C|1006
6TC3|1|23S1|C|1007
6TC3|1|23S1|A|1008
6TC3|1|23S1|A|1009
6TC3|1|23S1|A|1010
6TC3|1|23S1|G|1011
*
6TC3|1|23S1|C|1150
6TC3|1|23S1|A|1151

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L131

50S ribosomal protein L13

Chain L201

50S ribosomal protein L20